NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209777_10013114

Scaffold Ga0209777_10013114


Overview

Basic Information
Taxon OID3300027896 Open in IMG/M
Scaffold IDGa0209777_10013114 Open in IMG/M
Source Dataset NameFreshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8556
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (9.52%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location
Location NameUniversity of Notre Dame, Indiana, USA
CoordinatesLat. (o)41.7Long. (o)-86.23Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011397Metagenome / Metatranscriptome291Y
F020177Metagenome / Metatranscriptome225Y
F022996Metagenome212Y

Sequences

Protein IDFamilyRBSSequence
Ga0209777_1001311412F022996N/AMETIVKINISKMKEDIKAKAEEQKFLKNQRKTVHLKGERKMSANDATYKVLENSEKLRALYAAYGLARGKSFSQIENHYPEENHPLQKIQYRIDKIMESYKMLEEVKVQSEI
Ga0209777_1001311417F020177N/AMENIDLNNTYWDRLRGYVTELRVDSRWILRKNDDDKPYGSLRIVSHPDLPYGHLRAIFTYVVKIRPKTKEEKIQTTEDYQMEVTELEVYSISEDIKTESQIYEAPFKELEEMFGVKIFAK
Ga0209777_100131145F011397N/AMKDFELLKRTYPVSECNRICDGYFYILKNSTPEERKEWGIDLNELQRIIITGEKYIYQVAIENGEFKTMCLCFANYAIIRKKIFKLEDE
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