| Basic Information | |
|---|---|
| Taxon OID | 3300027896 Open in IMG/M |
| Scaffold ID | Ga0209777_10006075 Open in IMG/M |
| Source Dataset Name | Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 13701 |
| Total Scaffold Genes | 26 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (15.38%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | University of Notre Dame, Indiana, USA | |||||||
| Coordinates | Lat. (o) | 41.7 | Long. (o) | -86.23 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011397 | Metagenome / Metatranscriptome | 291 | Y |
| F020177 | Metagenome / Metatranscriptome | 225 | Y |
| F022996 | Metagenome | 212 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209777_1000607516 | F022996 | N/A | METIVKFNHSKMREDIKTKVEEQKFLKNQRKTVKIIGERTIPAKDAAYKHMTNREDLRIMYAAFGLARGKSFSQTENHYPEADHPLQKYQKSIDRLLEKYKILEKIEVPVEK |
| Ga0209777_1000607519 | F020177 | N/A | MEGFNLNDTYWDRLRGYVTELRVDARWVLRQNDTKKPLGSLRIVSHPDLPPGQLRAHFTYVTSIKQKTKEQKLKAIEDYQMEVIELEVYSINDEIKTETQTYVALFKELQDMFGIDIFEKEKK |
| Ga0209777_100060758 | F011397 | N/A | MKDFELLKRTYPVSEIDRPCDGYDYIMKNSSKEERQEWGLDMNELQRIIREGEKYIYQVAKEGKEFKTMYLCFTNYAIIRKKIFKLDDD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |