| Basic Information | |
|---|---|
| Taxon OID | 3300027894 Open in IMG/M |
| Scaffold ID | Ga0209068_10000001 Open in IMG/M |
| Source Dataset Name | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 561745 |
| Total Scaffold Genes | 484 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 319 (65.91%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pennsylvania, USA | |||||||
| Coordinates | Lat. (o) | 41.1289 | Long. (o) | -78.4195 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000078 | Metagenome / Metatranscriptome | 2550 | Y |
| F000214 | Metagenome / Metatranscriptome | 1570 | Y |
| F000414 | Metagenome / Metatranscriptome | 1169 | Y |
| F000687 | Metagenome / Metatranscriptome | 937 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209068_10000001150 | F000214 | AGG | MKNAYEVLRQKEMELARLEKEVEALRLVAPLLSEEKELMGEASKPVLAASVPQQPIRIPAPAMAVNAMPPQPARATGSWDETAKRWP |
| Ga0209068_10000001189 | F000078 | GGCGG | MPESFYSLARSAFQTTVFGLVAAGSFTPDVQEGTPLENLYCLRCNRELEPGHKSVAVYLFAQTVGIRPRQKSQAQRICFCPQCSVSLAMGPAPEGALNVAAWRMIRDLVGADPALNQAAWQDMQSVEGLIPSGDAEALPRAAGYFEF |
| Ga0209068_1000000128 | F000414 | AGGAG | MSAPSRRPEIRRRRTRAEKIAKLRKRLTTLKTDADRTPILAKLHRHSLLSPGQPLVK |
| Ga0209068_1000000139 | F000687 | AGGA | MNMQIQEVTGSNGGILTDQGHVHEVVRQARVELQLLLRQRAEVMKRIGTVKQTLSGLANLFGDAVLDQELAEMVDRRGSGRQPGFTKACRGVLLEARQPLSARDVCESLQQKHPALLARHKDPVASVTTVLNRLVAYGEALPVNLQNGRRAWQWVAETSALGA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |