NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209380_10000239

Scaffold Ga0209380_10000239


Overview

Basic Information
Taxon OID3300027889 Open in IMG/M
Scaffold IDGa0209380_10000239 Open in IMG/M
Source Dataset NameWarmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37715
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (87.18%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location NameUSA: New Hampshire, Hubbard Brook experimental Forest
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000410Metagenome / Metatranscriptome1170Y
F004553Metagenome / Metatranscriptome433Y
F006799Metagenome / Metatranscriptome364Y
F014644Metagenome / Metatranscriptome261Y

Sequences

Protein IDFamilyRBSSequence
Ga0209380_1000023913F014644N/AMDKKEINSTKMTLNFLIWVGGVFMLLLFALLAHFVWRIF
Ga0209380_1000023917F000410GAGGMNRKLVWIDQPRFQGFGCSECAWVFNPSGAPAGSSFAEMMRNFELQRDKEFALHVCADHSRSTKSRKAP
Ga0209380_1000023919F006799AGGGGGMQLALQNAETINRLVEQGEFLLKSFHDEHQKDPLGVETEFARGELIGWRSTLHTLYRDCAEDIVSRVVTRTRLQIPDGEVPSGAAHAY
Ga0209380_1000023923F004553AGGAGLNRFAKTAVAALIATALVWFVAAAPQAHADDRSHCQHAIEKAEANLDRAIHDHGDHSPQADDRRRDLNAERQKCWDQYHQWWNGKEHRWETEHTWDANPH
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