| Basic Information | |
|---|---|
| Taxon OID | 3300027887 Open in IMG/M |
| Scaffold ID | Ga0208980_10013488 Open in IMG/M |
| Source Dataset Name | Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site A1 Bulk |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4774 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfobacca → Desulfobacca acetoxidans | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland → Microbial Community Impact On Carbon Sequestration In Managed Wetland Carbon Farming |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Twitchell Island, Sacramento and San Joaquin Delta, California, USA | |||||||
| Coordinates | Lat. (o) | 38.107 | Long. (o) | -121.6475 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F030143 | Metagenome / Metatranscriptome | 186 | Y |
| F056343 | Metagenome / Metatranscriptome | 137 | N |
| F098715 | Metagenome / Metatranscriptome | 103 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208980_100134882 | F098715 | AGGTGG | MADTIKVQAMQKLAGVFGAVASIGSVHRWQGSPTDLDRVKLPALFFWDEDETRDKRNRLAMGTLKLYVAIFCRLSPSGAASFPDVADNLQGAIHNALLGTSELKGLVENLQEERVWKEFPNDQYGVLFMSFTLTYAHAWGDAFSTTY |
| Ga0208980_100134884 | F056343 | AGGAG | MPEQITDHQVLSSYLAEEQINGFTVKPWTIKQLLLVMPILDALVQEFKNQGVTLDNLGEMFENQGLAAAKDIIQTILPRLPEFLSVTLRIELEQAGEIDLGLGLQLAVKVLRMNVDHLKNAFGLIMSQMGVLIGPEVTP |
| Ga0208980_100134885 | F030143 | N/A | LASQGHDLYQLIDGYPALMVKGLVAASQVRSRHRLMEQGVALTVAVTGGLDLALNQGKGKVLERWLKEMSGEEKSEPPEEKPKMSDRAVSFFTGMPRQGPDRPAREK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |