NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209283_10361814

Scaffold Ga0209283_10361814


Overview

Basic Information
Taxon OID3300027875 Open in IMG/M
Scaffold IDGa0209283_10361814 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)950
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California, Eel River Critical Zone Observatory
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042255Metagenome158N
F074185Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0209283_103618141F074185GGCGGMRPSRVSTEVTTPTAPAHEADAERRHEHRFQVSESIARLVMRTTANNLPLSRDDRPYQWSTTTYCDTVAWSIFRAAQKGSAMQLRIREYHRTRPREVLNPGTAWIEFKDDEQDTSLKERFGVPMDVARSFLRGEAALPEPDHGLAERAAMLLREGARPVAVTQYN
Ga0209283_103618142F042255N/AAIQLSERIVIPAIHRPATELVYSQVAAAIRPRARAFLSGGVNAFGNFAAALALLAGLQLHDNQLLLGVATGLSGVYLYNAWHMMKLFGRRILENITSVDPDVRFSAAEILETEHEAVPEDLLRSLVGAIPADVEHGVRVALTRRGLLAVAADATE
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