Scaffold Ga0209701_10080221

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209701_10080221

Scaffold Ga0209701_10080221

Overview

Basic Information
Taxon OID	3300027862 Open in IMG/M
Scaffold ID	Ga0209701_10080221 Open in IMG/M
Source Dataset Name	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2057
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California, Eel River Critical Zone Observatory
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000217	Metagenome / Metatranscriptome	1557	Y
F000440	Metagenome / Metatranscriptome	1137	Y
F001138	Metagenome / Metatranscriptome	767	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209701_100802212	F000440	N/A	MQTKYTPAQRAAEYLKRVAALTGAEQVRGDSYWLRVGRRHFLVDSKFVRLISPRGESTCFSVATDPDIPGAEAVASALLQLKDNPRLFEKWRELQGYTFKANGKMFRNRYLLNRDDT
Ga0209701_100802213	F001138	GGCGG	MSSANLFMIAFPALIVWKFVFAGLQRRLLVRAIAPQQQRHHNVLEEAFHISDPEGVAVIAGDRFENSSDGLDPLDRKDRAKTYLRRIVALTGATHMGNRYVLDVGTTRFYVRDRYVGRMRDVIDPKCAYEETCFYSAHEEMPKSEHIAAALLQLTNNPALFDKWAAQSGAFKADGQAFSPAQ
Ga0209701_100802214	F000217	N/A	SKILTFSSHGDTTLLEYDPATADMEEVNKVIAEYEAKTGAQPFDIATGERLEKVTREQNEVLMVHPIAGG

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