NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209274_10000020

Scaffold Ga0209274_10000020


Overview

Basic Information
Taxon OID3300027853 Open in IMG/M
Scaffold IDGa0209274_10000020 Open in IMG/M
Source Dataset NameReference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)181117
Total Scaffold Genes192 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)144 (75.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location NameUSA: New Hampshire, Hubbard Brook experimental Forest
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000426Metagenome / Metatranscriptome1154Y
F001709Metagenome / Metatranscriptome648Y
F003084Metagenome / Metatranscriptome508Y
F064445Metagenome / Metatranscriptome128Y
F067999Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0209274_10000020151F001709GGAMPQEVSVSYQAIKSKVYRLIDALVIGEKTEVDVQESIRRWWELIHPADRPIAQKYLLLVLERSCLALDAVEEGLLDATQQEVPRRSVASKALKLVSRVVKQTSLTGAHVDGPLT
Ga0209274_10000020169F000426AGGGGGMKDIHEVLRQKQTKYAQLGKQIEMLQQAAEKLREVAPLLAENDDEDNAVLTEVDDSDTTAKSSAAGAGAGASKAARPTAPRWP
Ga0209274_10000020173F067999GGAGMNYDEVQEISAEMRTPLDEQTLVMTNPVRITLAEMPQPEIDAYQARNDRLHEFGEELSKLDGRVLRAYRFHSAWLIRIVPPHTKHTSISSWVAARWRIGAAVARAVRIAITSTRSVERDETGAKRAQRTKEEGKEVRAIADKISNYARSVHRRYPSGAVVVGENDLAAQLRKRRDRVGTALNLLLGEQKVKKASLGGYWKLNV
Ga0209274_1000002053F003084GGAGGMSGKQVVIAVLAVTMSIVCASAAAQDEKNELTGVLGRIFISNQGIIGPDAPTVNPIIHSGAGLTFEVNFSRRLFGTSIYGISAEVPAAFNLDEKLNAGGPVVPSNYKQIFVAPSFRVNLFPETAVSPWVSVGGGFAYFSENKNLLYTGTNPGSSTTSGVLQGGFGLDVNPFQQRFRRLGFRLDVRDFWSGTPSFPLADTGKTRQHNFFVGGGAIWHF
Ga0209274_1000002055F064445GGGGGMQKASSVSSVPNVTIRVSGKLFQTHLSYLDQLVETAGACELWVLLDLENLENLDRAALLYLMRGEGYTFDLNSCPSFIREWMSHEFRHRVA

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