Scaffold Ga0209180_10322749

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209180_10322749

Scaffold Ga0209180_10322749

Overview

Basic Information
Taxon OID	3300027846 Open in IMG/M
Scaffold ID	Ga0209180_10322749 Open in IMG/M
Source Dataset Name	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	883
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California, Eel River Critical Zone Observatory
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000208	Metagenome / Metatranscriptome	1593	Y
F002560	Metagenome / Metatranscriptome	548	Y
F007596	Metagenome	348	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209180_103227491	F002560	N/A	AARVPLIPLPIALYISDGLVFELYDGGQPSRRFSIRWERLVPAKQAAPEAASDGPQTGSRAHQE
Ga0209180_103227492	F000208	GAGG	MRIHVTTRADLYEKRKQEHIECGYRIEGERPIPVNGFCSFIAMREMPVSDTVDELVALAINGGRGSHRDW
Ga0209180_103227493	F007596	GAGG	MSLRIRFRFDGKCNLHPRYDPTRDGRPQHSNCEGCESLYVIHLYTKIAKRRAENEHGILVRTSSGREEQHAIDEPGQLSNTENR

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