NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209089_10124221

Scaffold Ga0209089_10124221


Overview

Basic Information
Taxon OID3300027838 Open in IMG/M
Scaffold IDGa0209089_10124221 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1572
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)177
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004537Metagenome / Metatranscriptome434Y
F005848Metagenome / Metatranscriptome388Y
F032859Metagenome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0209089_101242211F005848N/ALPVQRTYASTIAALNTPVFMVDNQTTLNSFLTLTPNVLQDVVNLIDPAATQLLQYTLVKNGNATSVRAFSSAISATTAGRVPIGPVSMSSGSYQWQAVQTVGALFNGQILVRYGSPLN
Ga0209089_101242212F004537AGGAGMPFSNSIVNNFALNSGNTPLLYPVRVICPAGATTGISFPDQFLGRAISLKISNNDSANAASYDYNLNGQFQNLAASNFSTVDNTVVNYLTVIAGAAGTTLVEAQVLPATRTEVPIEVMV
Ga0209089_101242213F032859GAGGLSFGGGSSGGSSTVAAHTHNSTLSGDGGSLSIPLTQMDDVSLYSKILVGA
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