NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209089_10120469

Scaffold Ga0209089_10120469


Overview

Basic Information
Taxon OID3300027838 Open in IMG/M
Scaffold IDGa0209089_10120469 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1601
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)177
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021405Metagenome219N
F045366Metagenome / Metatranscriptome153Y
F081442Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0209089_101204691F045366AGGMTESNILTPQQVNMANEAEPHEVLLAIHKRVVDTEKLMIQYRTHAQNMDVEVGMLKERIDKLEEVQN
Ga0209089_101204693F021405AGGAMTEEILEVDEEKLVYRVGYIKEKLLQMSTALRGQIPPDLTDQDLTEDNAFKQWIIVNSIYDASVQDEGNDGFNRLLYYLFDKSKGNVARLVNDYDINIKVNDAGQLEDMQLVILETETAEESNDK
Ga0209089_101204694F081442N/AVTLSNEEKAVVGFINESIASNYINRKNIIAMINKSFGPKVVLVNLSLHKIHEVMENNFSTSVQITPNTMTHQLIKQPIQTVIVNPNDHDFFVPLNIPYIIKKYADNIEGGDFEIENHKDEKELSFYEIDRESKRYVFCPEGPPVDGPQFGEG
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