NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209089_10045248

Scaffold Ga0209089_10045248


Overview

Basic Information
Taxon OID3300027838 Open in IMG/M
Scaffold IDGa0209089_10045248 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2876
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)177
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003091Metagenome / Metatranscriptome508Y
F012582Metagenome / Metatranscriptome279Y
F055198Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0209089_100452484F055198GGAMSKFEEASCKVLGVILFFVMCILAFQLMGCMCPIPPAPLEYEYIDEVKMENFA
Ga0209089_100452485F012582N/AMTEFHKKLKHLSATMIHWAEENKIRTKRNGNYEIPQRNGIDWKFDFKFVTKLDSMLADGLDVKLKKKEMEMCNQLYKYYGNVYVKI
Ga0209089_100452486F003091GGAGMSTHPVKPITKPGEGKEHQKQVTQERYLEERYQISLGLKGPKRLEKESHEDFHTRRKAENGLLKEYRRGVWMTDGNCTALKSSCRNCE
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