NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209060_10069917

Scaffold Ga0209060_10069917


Overview

Basic Information
Taxon OID3300027826 Open in IMG/M
Scaffold IDGa0209060_10069917 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1664
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005983Metagenome / Metatranscriptome384Y
F006433Metagenome / Metatranscriptome373Y
F007657Metagenome / Metatranscriptome347Y

Sequences

Protein IDFamilyRBSSequence
Ga0209060_100699172F006433GGAMADVNYRVTRRDDESFSVEVTRVGALPQMAAGFATEAEAEAWIAQDKRFWEAADPFGVSKRRHRGF
Ga0209060_100699173F005983AGGAGMRLSEIDGQIAYDLEEFCKDFGHPRGRLFTLEVTCDAVTYVYADVAGTVQAGRVIFELNGEDVVCTRKAH
Ga0209060_100699174F007657GGAMSWVTFEVAGGGLVAVQRQHVVAIYDEQGTVKLSTTACGVHVLRDITVQRATMKLTVLAEADPNA
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