NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209039_10024854

Scaffold Ga0209039_10024854


Overview

Basic Information
Taxon OID3300027825 Open in IMG/M
Scaffold IDGa0209039_10024854 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2978
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002960Metagenome / Metatranscriptome517Y
F026382Metagenome / Metatranscriptome198N

Sequences

Protein IDFamilyRBSSequence
Ga0209039_100248541F002960GGAGMVSQLYVDGITDTVPHDIASILTASQIEIAVDEDTLSVSVVCPDRWFLGDVAMVTSRDGHAFAGEVQGMDICTG
Ga0209039_100248544F026382GGAGGMPKTSIYVPDDLAELVRHYGLSVSEVAQAALREAVNESGRHFRRELAYVALEHVKWREVVAGNYPDDPRNRQAVAALRALAEYILALEPDDSRLVHLRHSAEHARQLDSYVPETGEACGNWGRTLGSYAFYQDCTPEEGLRKLTEASDKDDAEWAALGGDVLAEVTRSVARSLGFADQDAIADADPEEAARIVRGRRRGTYMYQSA
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