NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209039_10002404

Scaffold Ga0209039_10002404


Overview

Basic Information
Taxon OID3300027825 Open in IMG/M
Scaffold IDGa0209039_10002404 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15948
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (76.19%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014825Metagenome / Metatranscriptome259Y

Sequences

Protein IDFamilyRBSSequence
Ga0209039_100024041F014825AGGAGGMAGNKLTIQLTTDQQTQIRDATGKTVTELNIDLASTGQISEKDLQKLSGGVQKIRE
Ga0209039_100024044F014825GGAGGMAGNKLTIKLTDDQQHQIKTATGKSIKELNIDLAATGHLTDKDLADVAGGSGRVILKDTIPP
Ga0209039_100024045F014825AGGAGMAGTKLTIKLTDDQQNQIRNATGRKITELNIDAAAISHLTEKELDQVAGGAGEIVITKDP
Ga0209039_100024046F014825AGGAGGMAGSKLTIKLTDDQQKQIKNATGRSIKELSIDLSVVEQLADQDLAKASGGIHHEGM
Ga0209039_100024047F014825AGGAGGMAGNKVTIRLTDDQQSQIKNARGRSITELNIDVAATGQLSDKDLDQAAGGVIIEFGKI
Ga0209039_100024049F014825AGTAGGMAGNKLTVKLADDQQNQIKTATGKSIKELNIDLAATDHLSEIEFDNVSGGINFIKADKG
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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