| Basic Information | |
|---|---|
| Taxon OID | 3300027825 Open in IMG/M |
| Scaffold ID | Ga0209039_10000531 Open in IMG/M |
| Source Dataset Name | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 36793 |
| Total Scaffold Genes | 32 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 30 (93.75%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Calvert Island, British Columbia, Canada | |||||||
| Coordinates | Lat. (o) | 51.62 | Long. (o) | -128.09 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000042 | Metagenome / Metatranscriptome | 3762 | Y |
| F000309 | Metagenome / Metatranscriptome | 1327 | Y |
| F001083 | Metagenome / Metatranscriptome | 783 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209039_1000053110 | F000309 | GGA | MRGAHAGVIHIEYGFAAVGTLDYLKVWSSLTRGHWVLACEYWMSANTFHAAGLGFDNGYQSEGLAHILQVAMQHQNSFVLPPNLGRQGLLQISTPTAEESVAAAALINEAFDRLAAPLAQSAVA |
| Ga0209039_1000053112 | F001083 | GGAG | MYINERQLAISLLEGLREDLTYARLNDGRRILDVADLRQYIYEQIGRIRTNAYFAGILYGNSDGKGQDVSKSDGHNGKAHL |
| Ga0209039_1000053114 | F000042 | AGGAG | MRNIKFVVRVSRGGTRAPAYVQRIDRDPVQMTTNRKLALMMGKFTAEDAVKSIQNSRCIPELVPVQVAV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |