| Basic Information | |
|---|---|
| Taxon OID | 3300027813 Open in IMG/M |
| Scaffold ID | Ga0209090_10016860 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4308 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (20.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Arctic Ocean: Canada Basin | |||||||
| Coordinates | Lat. (o) | 73.2247 | Long. (o) | -150.2247 | Alt. (m) | Depth (m) | 67 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001222 | Metagenome / Metatranscriptome | 743 | Y |
| F003188 | Metagenome / Metatranscriptome | 502 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209090_100168604 | F001222 | N/A | MKRIQELVKMVTEAAKINFAGHSFLLKVDTNEDPNKKGVKVQFIPTEFGSLTTTQQNDIAIELEERLEGGLSEYELRVERDRNLKDKSIIGFFIYIEYFDKIIRKALGGQNPAAPEVEPE |
| Ga0209090_100168605 | F003188 | AGTAG | MIDPKKRIRQTLFSIHPLSYRIKTKSPDKDTMDKKLFIDILKQLRKIEDRRDFMQEEIGLDMTIYEEQFFTVIENLMKMHFSKEQLALIQMYLYQLMPDKEWDGTIILEKNKKETTHPFKTPEQVWSIINKLRNAEISSKD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |