NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209656_10000021

Scaffold Ga0209656_10000021


Overview

Basic Information
Taxon OID3300027812 Open in IMG/M
Scaffold IDGa0209656_10000021 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)117447
Total Scaffold Genes102 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)73 (71.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001800Metagenome / Metatranscriptome632Y
F028589Metagenome / Metatranscriptome191Y
F069079Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0209656_1000002117F069079GGAGGMKKSAWLALPAVLGLSVALAAPQSTHHYPTPPESMDPASTDKEPGTLPRRADLAQLQRDADELSRTAQTIPGDVANVRKGMLPKDVIEKLKQIEKLSKRLRTELNP
Ga0209656_100000217F028589N/AVILVVASLGFAEETSFRHVRLPNLKGKHIKAVLTFSDNDKAVEVRPAKGTAVIVPYSQIDKASYEFTEVLSSKTHWLKIDYHDQDAHKVLVVLMNKHDYLHILDALRAHTGIDAEILGNADKIQGRDRLRP
Ga0209656_1000002175F001800AGGAGMKSNTSMRILGKYTCFAALLALGITGAIGVAHAGGWRGDDDQLVQVAELEQQIHATFHAAVSVHDPINGDSPEVITQRIRDVLSIWTKDAELTVVSTTATAGNYIGNGDPDDPASCPLPSGDTSASGQQGTLCTFFKYVSGGLQPTNKFVSLSPAYKTKYVPGRDDDGRWKSSVYFECHYFDVSLNPATGQPFWTAKSHVDLDGEAKKIDGRWLLTHVTSSAVPVPVP
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