| Basic Information | |
|---|---|
| Taxon OID | 3300027812 Open in IMG/M |
| Scaffold ID | Ga0209656_10000016 Open in IMG/M |
| Source Dataset Name | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 133186 |
| Total Scaffold Genes | 114 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 76 (66.67%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Calvert Island, British Columbia, Canada | |||||||
| Coordinates | Lat. (o) | 51.62 | Long. (o) | -128.09 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000042 | Metagenome / Metatranscriptome | 3762 | Y |
| F000309 | Metagenome / Metatranscriptome | 1327 | Y |
| F000668 | Metagenome / Metatranscriptome | 948 | Y |
| F001829 | Metagenome / Metatranscriptome | 629 | Y |
| F018838 | Metagenome / Metatranscriptome | 233 | Y |
| F081666 | Metagenome / Metatranscriptome | 114 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209656_1000001623 | F000668 | N/A | MGHPGLRPSRLWDIGMVKAIIGFLVIIAVIYVLFQVAPPELSNYSFEDDLKTVAMMGGSNPHTSDDQLVASVIKKAQEHEITLTPENVTIQRIGTPGSPSVYIAADYSVPVTLPGYSFTLHFTPSSGNKGF |
| Ga0209656_1000001651 | F081666 | N/A | MITHMRQAKSFTISNEILAEIASTKGPGSTSKRVNELLKRALELERRERLELEAAEFFANDKADSGRERGAYQKASKQALSRG |
| Ga0209656_1000001690 | F000042 | N/A | VTSSINHNAVILESMANIKFVVRVNQGGTRAPAYVQRIDRTPFQMTTNRKLALMMGKFAAEDAAKSLQNSRCTPELLPVQDIA |
| Ga0209656_1000001691 | F000309 | GGAGG | MAHNGNQSLDQLLESAIVMSWADLMRGAEAGLIHIEYGFAPGGTLDYLKVWSSLTRGHWLLACEYWMSPSTFHSTGITFDNGYQSEGLAHTLGFVMQHQDAFALPQNLGRQGLLQIATPTLEESTAASAAVSHAFDRLGSALAEPALA |
| Ga0209656_1000001696 | F001829 | GAGG | MKKHYLHLSAYPCDTCSGPVIAGSTAVRENEISKETDIRRVGPPICLSCGHRQETASAPARVRHLLPIAWDAVDGMDNRLPTAVFVEALNRAEQH |
| Ga0209656_1000001698 | F018838 | N/A | MSFQIHKNGSAVDGVSYPSLEEASAALEKAARGGEVTQVDRLDQVVRRYTLDECRNARNSWNKA |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |