| Basic Information | |
|---|---|
| Taxon OID | 3300027805 Open in IMG/M |
| Scaffold ID | Ga0209229_10030456 Open in IMG/M |
| Source Dataset Name | Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2363 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Sandusky Bay, Ohio, USA | |||||||
| Coordinates | Lat. (o) | 41.474889 | Long. (o) | -82.854137 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F018535 | Metagenome / Metatranscriptome | 234 | Y |
| F019121 | Metagenome | 231 | Y |
| F028501 | Metagenome / Metatranscriptome | 191 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209229_100304563 | F028501 | GGA | MRTITAKYTGTCAATGARILAGDLIQWSKGRAVLLDRRTTAVDTVTLYGEHGANTYYQNARGRCIDAPCCGCCTI |
| Ga0209229_100304564 | F019121 | AGGAG | MAYTLKRSINGLTHDDIKRIYDQNPNMTLRELSNLTGFAIPYLKKLLLEG |
| Ga0209229_100304566 | F018535 | GAGG | MKTHTDTSALQWPQHLWPYTYTHGDAELLCFVDWEPADRSVGWTGGAWLIHAYAGGVDVVDLLKDTIIKDIERAAAEALLEGPTC |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |