NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209229_10021343

Scaffold Ga0209229_10021343


Overview

Basic Information
Taxon OID3300027805 Open in IMG/M
Scaffold IDGa0209229_10021343 Open in IMG/M
Source Dataset NameFreshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2797
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameSandusky Bay, Ohio, USA
CoordinatesLat. (o)41.474889Long. (o)-82.854137Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014089Metagenome / Metatranscriptome266Y
F033645Metagenome / Metatranscriptome177Y
F037494Metagenome168N
F105053Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0209229_100213434F037494GGCGGMKIKPTIEDKVLAHTVALERIAEIYGQPDHSSRYDRRLGFHDYVAQVAESIVAEILVARFLGYVNFNPRASRFKETADVGSNIEVRWTRYENGQLIVYENDRVTDVAILVVGTSPNYRLAGWIPVAMAKRPRYRHAKQPTWWVTQQNLQPIENLKGSNYGTATL
Ga0209229_100213435F014089GGAMEATSLKMSSYIELLNPQTKVGKLLQDGEVIAEYKVEQCDSCSKWTKLDAFGYTKGQGGEKLIWLCGGCR
Ga0209229_100213436F033645AGGAMSFLDNYEDVAARIARLWLTHPTARVQTNIIDFNAEKGYVLIQAQIFREYEDLQPSATDYAFGNVATYNVNMKKFFVEDTVTSAIGRAIGLLLGSDKRPTRQDMEKVETISAKVANSTADDYDPWTQKFGEVPSYKTAEEAEQSGIPSLGSSMDEIKKQLGGELIAEAPQCSHGHRVWREGTSAKTGKAWANYSCVERKPNQCDPLWYVFTSDGTWKPQV
Ga0209229_100213437F105053GGAGMNELGIVVAMSIAAILWAAMSYSVGYKEGQREGFKRGRAVSRHAAKDVR
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