NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209229_10013746

Scaffold Ga0209229_10013746


Overview

Basic Information
Taxon OID3300027805 Open in IMG/M
Scaffold IDGa0209229_10013746 Open in IMG/M
Source Dataset NameFreshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3443
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (92.31%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameSandusky Bay, Ohio, USA
CoordinatesLat. (o)41.474889Long. (o)-82.854137Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002515Metagenome / Metatranscriptome552Y
F006385Metagenome / Metatranscriptome374Y
F071231Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0209229_1001374612F002515N/AMKKSQEELRRLMELRRSNAASAIPNKKKYNRKKCQSLMLELRKERGPND
Ga0209229_100137465F071231AGGTGGMMTRKDYVATAEILNNYFATSVFDEQGELLFADLVDDFSLMFETDNPRFSNETFVKACYKEKELSQ
Ga0209229_100137466F006385AGGAGMILDTGTLIGITIALAGSLFVMGVFWRQNIEMQKEIRRLQVALRTERLKK

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