NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209229_10002022

Scaffold Ga0209229_10002022


Overview

Basic Information
Taxon OID3300027805 Open in IMG/M
Scaffold IDGa0209229_10002022 Open in IMG/M
Source Dataset NameFreshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8295
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (82.35%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameSandusky Bay, Ohio, USA
CoordinatesLat. (o)41.474889Long. (o)-82.854137Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000763Metagenome / Metatranscriptome901Y
F062556Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0209229_1000202211F000763AGGAGGMNIKNPYVLTLGAFLAAWAGSDFSLDHRAVLFAILSGVFGYATPKKK
Ga0209229_100020227F062556AGGMSQWTPEWQVSINGGGDYTNLTLANMTITSGRQDIYSQPYAGYCNVEIINLDQSPIVIDINDQIIIKVKDSSGTFVNLFGGYVTDIDVEVTQASSTAISERIKVIALGALSKLPKTLTTGVLSKDFDGNQIYTILSDALFNTWNEVPAATQWNTYNATTTWANAENSGLGEIDQPGDYELTARSSSTTDIYSLVSALATSGLGYLFEDAQGRINYADSTHRNSYLATNGYVDLTGNHALARGVRTTKRSGDVRNNVTITYKANAQVSASNADSIASYGQQAYEITTSLENGADATTQANFYLGLRAFPEAQFKSITFPISNGEIDDTDRDALLNVFMGMPVNITDLPANITNGQFQGFVEGWTFSAGYNSLYLTLTVSPTAYSIQSTRWNGVSGAETWNTLSPTLEWIDATIVA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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