NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209229_10000045

Scaffold Ga0209229_10000045


Overview

Basic Information
Taxon OID3300027805 Open in IMG/M
Scaffold IDGa0209229_10000045 Open in IMG/M
Source Dataset NameFreshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40827
Total Scaffold Genes63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)58 (92.06%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameSandusky Bay, Ohio, USA
CoordinatesLat. (o)41.474889Long. (o)-82.854137Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000368Metagenome / Metatranscriptome1223Y
F002827Metagenome / Metatranscriptome527Y
F005146Metagenome / Metatranscriptome410Y
F019314Metagenome / Metatranscriptome230Y

Sequences

Protein IDFamilyRBSSequence
Ga0209229_1000004522F000368AGGMETLKQVSLTWFRAAASAAIALYLAGETDVKTLGAAALAGFLGPVLKWLDPSAKEFGRK
Ga0209229_1000004542F005146AGGAGVKLINFYQIMNSKGDIETGTASASEAIKWFRKGFNNSIFVSVWNEEDIEEPVLVTDKIEVTNLLLSLLVSEREEYYPKPKKEWAR
Ga0209229_1000004544F002827AGGAGGMNKEYYQAKADLCQKLAIQQMTEGNAKEAGDNLIRMVNALNQIQLINYKEEKGL
Ga0209229_1000004557F019314AGGAGGMNKKGSRASAPVQKPTEGKKDTSKPKGGDVKFGYAPAGRRGKPA
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