NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209711_10099652

Scaffold Ga0209711_10099652


Overview

Basic Information
Taxon OID3300027788 Open in IMG/M
Scaffold IDGa0209711_10099652 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1472
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)79.2466Long. (o)-150.0613Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038691Metagenome / Metatranscriptome165Y
F066809Metagenome / Metatranscriptome126Y
F067751Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0209711_100996521F067751N/AMEHIKDYKLFKESLDIELITERFSSDILRQFAAQDGGSRWRDGVAKDMQKFASLALDQISDADFTTTSPEAYWKGGDAKNPNKVGFFVDDDPGFIKWAKANKKYLPGDLTLGNISKYGIVLSVVRGGAGMWHGFATDRGGSYSRHRKGTEERYGLLAKEYDTNGVYRGYEGKNVVAKVTRKNLIDIATRVYVLDLDSLRDKYDVSGLTSDRANAKSGATALKDAKTIKKENQARYDAILTDRAAMTDVDKSVKDSIELLNQHISDALKDGTMDKFGNLTIGE
Ga0209711_100996522F038691N/AMGFHRRHIDNDQIIRIYNDGGIQRIREWYTRGVDALITETGLASQVGSILSDDEWVQLGTVHQDEEIIKTIQQHLGVEDIRK
Ga0209711_100996523F066809N/ASKDWNGIIKLRGTSITILWTMVTSMKGKGFFEARNFIELMAAFGQDLSQVVQKVHEDNQALRDNHARLAELDTEVNHPDVILDVAIDKYNEAEEELTNLMNEVDPVVETV
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