NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209711_10084448

Scaffold Ga0209711_10084448


Overview

Basic Information
Taxon OID3300027788 Open in IMG/M
Scaffold IDGa0209711_10084448 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1643
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)79.2466Long. (o)-150.0613Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037986Metagenome / Metatranscriptome167N
F047377Metagenome / Metatranscriptome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0209711_100844482F037986N/AMNKDLLPEELKDVLTEDSVSNIETALKEKVDLSVEAALTTQDELYAEKLEELVARIDSDHTAKMERVVESVDANNAKKLVTVVRKYERELNENATEFKDVLVESISSYIEEYIDEALPVQAIEEATANKTALSVLNNLRNVLAVDSSLMSESVKEAIVDGKGQINDLQKEFDVIKLENKHLKEAYEDAAARLVLDQKLSGFNDKKAAYLKKVLSDKTAKFITENFEYTARLFDKKEKEQMAAIREEAISQRTVKADAPKIIVEAKVKPSTPENPYIAGLDKMK
Ga0209711_100844483F047377N/AMAKKDATKLKISKFIDAISDKNYAAANKYLQSAVNNKLESRIKQAAEKPLF
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