NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209448_10000018

Scaffold Ga0209448_10000018


Overview

Basic Information
Taxon OID3300027783 Open in IMG/M
Scaffold IDGa0209448_10000018 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)62985
Total Scaffold Genes61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)44 (72.13%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001878Metagenome / Metatranscriptome623Y
F008094Metagenome / Metatranscriptome339Y
F070364Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0209448_1000001840F008094AGGAGGMRNTTRFIGFGLFVSSLLCVPGIFIQAAPAQTNPPPSDAHEMVTHQPRTLTKPADRSAALDLLDRARHNYDLHDISTPYALKVSFETSGAAQMEGEWTMEELSDGGSHWRWTAHLGDAQVIRIGADDRVYGTNPSEPVPLRVQMVRSALLRPIGRNAGAFAIRAANVERDGKEMSCLLLSRAIPPNPAPRSWYETEYCVDLATGLLQTWSAAPGIFAVYDYNGVAEFHGHTLPREVSIYEEGRLAVQAHVESLKEVSDIDPNLFQPTPEMVDEGGTFALAAPNRFPMRVDPSDGPTSTFFQPVIVHAILDAQDGSVLDAEPLQTSDRDLSRAAMDLVRSTAFEPSGFQQEAFINVQFHMPAARLGGPPIFHSSVGWVNLDHHGKYPPVRKPPPHLGK
Ga0209448_1000001848F070364N/AMPANDHRLTTHDRRKGYNSGVNAPVSPKPVADREDQDNKYRHQHRHSIYAAEATGLLLMAVLLLILTIIRYWRYIPWSAR
Ga0209448_1000001857F001878AGGAGMSAPSRRPEIRRRRTRAEKVAKLRKRLAAASASTDKDRLTAKLHRVGLVSPGNPLIKTA
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