NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209500_10005972

Scaffold Ga0209500_10005972


Overview

Basic Information
Taxon OID3300027782 Open in IMG/M
Scaffold IDGa0209500_10005972 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7869
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (92.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001477Metagenome / Metatranscriptome687Y
F003212Metagenome / Metatranscriptome500Y
F003863Metagenome464Y
F027417Metagenome194Y

Sequences

Protein IDFamilyRBSSequence
Ga0209500_1000597213F003212GGAMKDKWLVTLEIDTYDGDPKDWDWEKLSTGSDVIKIISSDFKGVVRPLEKEGESND
Ga0209500_1000597216F027417AGGGGGMNYDYRVTFVTDYLTITTNVELDLDDYTGNCSGEAYSQATFNAMNNIKDEIGRIDENIINDITVTLILDDREIELGEEEE
Ga0209500_100059728F003863GGAGGMESKQVSGGHVVHYRNYRRARDRALVRLAHLYPDTYKQLLNEQRSFDEQEGKTWSVTPDSRLTVGIHTRANGTPPFGDPADAGEDEGNYGGEA
Ga0209500_100059729F001477AGGAGGVSNIYTIHPKKSPLILLYEVVDEEGRAEWGGNDAEHCMQWLSLAPTGSRVLVSGWESDEEDAHLVGQSLDITDIIKAASL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.