NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209500_10001853

Scaffold Ga0209500_10001853


Overview

Basic Information
Taxon OID3300027782 Open in IMG/M
Scaffold IDGa0209500_10001853 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15514
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (68.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028710Metagenome / Metatranscriptome190Y
F044485Metagenome154Y
F103239Metagenome101N
F104434Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0209500_1000185313F103239AGGMNDSRFITYPSTVETNSNHRVVLIDATEQQLTQVERFLQTSEENFDVYIYPSDSYDLEWLNYASSDAELILINDASQVRVTPHGIRYQGNLLEYFERIELDLHA
Ga0209500_1000185317F104434AGGAGMTSQTLISNLRYQIEQLSQDELELEFDTYRTLQARSVRDEIYQELLAQELDKREQEEYS
Ga0209500_1000185319F028710N/AMFTYNNKTGAETMKKLTYYFKVGEKEFKVKAETAGDAMQWMNRNVMDTLNMGPFAWMDSVLPRTYYASAGNYWD
Ga0209500_1000185325F044485GAGMEHFVDWPPPAEWEEVVITWDIMLKSNRHKPSVIIDWLETAPGGRYHLHGWRATEGFAFRFEDPVDALYFKLRWF
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