Scaffold Ga0209175_10054414

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209175_10054414

Scaffold Ga0209175_10054414

Overview

Basic Information
Taxon OID	3300027781 Open in IMG/M
Scaffold ID	Ga0209175_10054414 Open in IMG/M
Source Dataset Name	Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 9/18/14 C2 DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1705
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Oomycota → Peronosporales → Peronosporaceae → Phytophthora	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Nutrient Removal → Unclassified → Unclassified → Wastewater Effluent → Wastewater Effluent Complex Algal Communities From Wisconsin, To Seasonally Profile Nutrient Transformation And Carbon Sequestration

Source Dataset Sampling Location
Location Name	Milwaukee, Wisconsin, USA
Coordinates	Lat. (^o)	43.023	Long. (^o)	-87.895	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F035199	Metagenome / Metatranscriptome	172	Y
F057918	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209175_100544142	F035199	AGG	VSRKEGISDLDTILRQAMCACILHNLLIEHPVLPDWFDEMLEELDQYDELNQSVEQSGGDTRRNQVFAYMLDGR
Ga0209175_100544143	F057918	N/A	MNPSIFKRTHSMPKLSKKVTFIKEYVVASRVRKAYIHFCLDDEDSFEDEINECMLRELAVLKESRCIFRGSYRQWETTWDGVLYDGKYLTDDEFLSHFRMDRSCVMQYNSLIENDQEFSGVYGKLGKRSWMLHVMLLLKLLGSYGNEAALAKLGLMLGISKGAVNDYVRQACNAILKHHDQVIKWPSVEERRDIRLRHHP

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