NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209279_10007343

Scaffold Ga0209279_10007343


Overview

Basic Information
Taxon OID3300027771 Open in IMG/M
Scaffold IDGa0209279_10007343 Open in IMG/M
Source Dataset NameMarine microbial communities from the West Antarctic Peninsula - Coastal water metaG006-DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4147
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (6.25%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location NameAtlantic Ocean: West Antarctic Peninsula
CoordinatesLat. (o)-64.8156Long. (o)-64.0406Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001217Metagenome / Metatranscriptome745Y
F023446Metagenome / Metatranscriptome210Y
F052198Metagenome143Y
F065127Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0209279_100073431F023446N/ATNIMTKNVEFIDQLCELMGEGFFLRDQYDQDDLFTMQDSIAKLIANNANQGLGLAKYMVGKFPSTFQTS
Ga0209279_1000734311F001217N/AMSRTKFNGFEKYFITTALKHAIEEAEENIKELVREGKRPIYAPGYFEMVGKELIAKVNSMTLKRDQ
Ga0209279_1000734313F065127N/AMSAIHQRASDKAFAKIETLNFLIQIDESNLVSGSYGGDISLDQFMLVVEGNKTELKVWQYIAELIEKSNKTQ
Ga0209279_1000734314F052198N/AMTKAELQAKVNELELTLNSLELNSKTLKDDLRETNKQLADVSKIKITKDTVNDIRNVIEESIHNSSLGNPDSYDVDFEIDYNNSLAIGNIEFNDADQLSEEISESIEYLFNIISDEDEN
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