NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1111326

Scaffold Ga0209296_1111326


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1111326 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1290
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047054Metagenome / Metatranscriptome150N
F058143Metagenome / Metatranscriptome135N
F101131Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0209296_11113263F101131GGAMKKLCKDCKYYKKYYGYGGTTGSYDECTCPLTIKEKDMVRGVIHRSFCIYERLSHSGCGPDAKYFEQYEPPVPDKPWWTKNLEKLKNLLV
Ga0209296_11113265F058143GAGGMILERTADLQILTDDKQTYYRISYNDEFKYVSWFRREYSILYPVDAALYDVLTQKHFEVSND
Ga0209296_11113266F047054N/AMVVNLRLVMRSGTNLMNKDTHSQNLIDYSIKSTLRPRIKDRTKVISAALQYVLNNDLVNRKYLEKIVQELEEMSE
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