NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1040070

Scaffold Ga0209296_1040070


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1040070 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2511
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000763Metagenome / Metatranscriptome901Y
F002135Metagenome / Metatranscriptome590Y
F007522Metagenome / Metatranscriptome349Y
F021981Metagenome / Metatranscriptome216N

Sequences

Protein IDFamilyRBSSequence
Ga0209296_10400702F021981N/AMPTTTEKLFNNATALVHERGVVYGHAIYNMERIAKSVSAYIDFPIMPHDIPIINVLQKISRLAESPGHEDSIVDICAYMAIYQLCIEAEKDGEFEWRAGE
Ga0209296_10400703F007522GAGMTLKEAGLVWVASMVGIIWAYGVLENQKQTMYWRGRKDGWDMHRRMIENKTNADNN
Ga0209296_10400706F002135N/AMAATRKRKKVNRRVVRKSPDPLSKLEVFYIAKHEMFKAARKAGFSEPIALALMDSPSSMPDWVVGDNGIIPSIPTPDEEED
Ga0209296_10400708F000763N/ALGAFLSAWAASNFAADYRSILWAVLAGVFGYATPKK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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