NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1039702

Scaffold Ga0209296_1039702


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1039702 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2528
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038673Metagenome / Metatranscriptome165N
F055558Metagenome138N
F072091Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0209296_10397021F072091N/AVAQIDLSKLPDALDTYLGDASQGSLLQQIIVEWWNKKVIPPIWANLDANGTNASSKLRQSFIPGTITKSPTSINTILLAEDYWEFIEYGRKPT
Ga0209296_10397022F038673N/AMWFLLFLIPLTSNGQVLIDTCVIQEANHYLVKGAIARRQVTILRKIVTSDSVIIDQQDSIIVKQKTNIGYLKDDNNALVKRNKAISRTLISYKMLSVVLTILSVVMWLK
Ga0209296_10397026F055558N/ASHKMVGHFGVGQQSNLTVENVEYYPLVWLYPDGFNLQSTGKLMTYNFALIVMDRVFESESNTIEVLSDTAQIMSDIFALVQTNTETDGDFELSINGNASPFYDSKTDILAGYAINFQVLTPYLSNSCVVPI
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