NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1034725

Scaffold Ga0209296_1034725


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1034725 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2747
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010247Metagenome / Metatranscriptome306Y
F013525Metagenome / Metatranscriptome270Y
F024771Metagenome204N
F032656Metagenome / Metatranscriptome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_10347251F032656N/ANFYLVTYAVSFVKVKSENFKEEVTHVRFFDTDNFANACSFLSSLKKVKKLRITGVEWELEQCSWFDYYDDVSNTIN
Ga0209296_10347252F024771GAGMNEKKYINNFNHQSYEVRSKNYKNISEDRFEHYCIDRGYCFTKLSLNSVTSSQSFADSVIPMFSKLPLIYKSQADYFIYKSKEEHEKSDNKEKCQWFVELKNATYEHGKTLAKIKVRDLKRYIYFEQGYTNQYTRFTICFPLNDKIIFKSVDQILKALPKAELKKFPNDNIEYFEIQLS
Ga0209296_10347253F013525AGGMTDLSLKNPDEIKQELDTCSEELAHALYEFRRCEEFKKITFSQIALTYKLDKNCSVAESEKYAYCDNNYKIIIEGLLVAEKQYSIARGKYSNLQSWVDLYRSWLVTQRDLSK
Ga0209296_10347256F010247AGGAGMNVQGTVKYVFDNRLGKDGSPNKFPNYKFKINENEIVLWSAIRPSFLEKGKNISVTCQASKKNGSLFVMTREDKSPMIQELPSNSSAEAKPDVSFNVDDFETESFNTAVTTIQREMGSSQVAPKAFNKDEYMFTMALLKSGIESGKIGVTKEEIDLKIKDYKFLFQMNFNN
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