NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1027333

Scaffold Ga0209296_1027333


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1027333 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3178
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002433Metagenome / Metatranscriptome559Y
F007466Metagenome350Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_10273331F007466N/ADVAITVSEVGSTAYTQEVTITALGALARLQKALTNGVLTQDFDGNQILTILSDLLVNSWNEVPAALQWQNYDPTVTWATAENTGLGEIDTPGNYELAQRSSSTTVVYDLVAALATSGLGYLYESATGQISYADSTHRSSYLAANGYTDLTANHALGRGITIKTRAGDLRNDVTIKYNTKSSNEVNDTDPASISLYGRLAQIITTTIKHLADATAQAAFYLSLRAYPRPIFDQITYALTNPELDDGDRDSLIKVFMGQPISLADLPPNMAAGNFLGFVEGWTFRASYNELSVTLSMTPLAFSLQAMQWQDVSVSEQWNTISGTLDWEHALVVA
Ga0209296_10273336F002433N/AMTVNEWTAIIGLVLAILAAVYSSMRFMVKSIMKELTPNSGKSLKDQVSRIEQRLDQLILEMAFQQNKD
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