NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1011529

Scaffold Ga0209296_1011529


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1011529 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5282
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000847Metagenome / Metatranscriptome861N
F001129Metagenome / Metatranscriptome768Y
F027126Metagenome / Metatranscriptome195N

Sequences

Protein IDFamilyRBSSequence
Ga0209296_10115293F027126N/AMATFRKYEFAVYADFRTINDSEVEPRTVVELGHINPANPKAWCVDILWEGDEPKNWTKYQTWPEPVGIHTFAGWDEQYTEDYNQRKSL
Ga0209296_10115296F001129N/AMLGQGGTMEFINGTVTGKNYDFLVVNTAATFTTLTGTGSENLLTAYNFSGASISAGVVISGRNGGKITAVTPSAGSVIGYTFL
Ga0209296_10115297F000847N/AMSWIKIKQALLDLANNHPQVNSFGTGDPLAIGTDNTINLRTPSRERIVYPLVFADVQSATTDAGTLDLVVGVYFSDRVESIKPMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISSLTNDPNEDWTLSSSVSLTRFVESRDDRTAGWQATMTFEIPFGHSVCEIPV
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