NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1007432

Scaffold Ga0209296_1007432


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1007432 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6830
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005167Metagenome / Metatranscriptome410Y
F009741Metagenome / Metatranscriptome313Y
F025484Metagenome / Metatranscriptome201Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_100743211F005167AGAAGMTVNSSRSMNAGLDAGATDGKYRKVRPDTEVGTESEATVANRQSLHPFYGYGFVTTEYPGKVNPGK
Ga0209296_10074328F009741GAGGMTQKFDGVYDYTKPWRAPIKPDQVAKRYSYLGPWATNAERLTQQALMVMNIPGADIQAMVRPPLPQIQLFPERYGYGDRRQPGIDDIVTVDRNYVEPRVSWFSGGVSGYQAAERNGLGTT
Ga0209296_10074329F025484GGAMDGDGMLSMELQARQIAENATRYNGSAPCPTCGVVMNPVEFMTNRGHCLSCVTQRNAQRVKGKMA
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