| Basic Information | |
|---|---|
| Taxon OID | 3300027759 Open in IMG/M |
| Scaffold ID | Ga0209296_1004209 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9526 |
| Total Scaffold Genes | 22 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (9.09%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000710 | Metagenome / Metatranscriptome | 925 | Y |
| F002259 | Metagenome / Metatranscriptome | 577 | Y |
| F003659 | Metagenome / Metatranscriptome | 474 | Y |
| F006697 | Metagenome / Metatranscriptome | 366 | Y |
| F008615 | Metagenome / Metatranscriptome | 330 | N |
| F026828 | Metagenome | 196 | Y |
| F036110 | Metagenome / Metatranscriptome | 170 | N |
| F070805 | Metagenome | 122 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209296_100420915 | F003659 | N/A | MPQTLTAADVVGRYLIAKKDVPVYDAPFGTRIGTIRKGNSTPEVYSYLVRQGQVFWVFDYTIPGQGPDAYYALQSPDAFSLSTVPGNVVIAPNVLPGVDVFPAGGTIKKYAIFGALGLLALLILKK |
| Ga0209296_100420918 | F026828 | N/A | MITEELISSAIAFLAGWILKRPDFVQKIISKIFTKK |
| Ga0209296_100420919 | F036110 | N/A | MEILLFAATVAVSLVGFLLARELNRTSEELKHLRQDVFRLSVDLAKLQTRLDEVI |
| Ga0209296_10042092 | F070805 | N/A | MYLQLAGLEPLNTAENPLAPGAKPYSYDKFYLGQGEDIILPDALYKTSPGGFVDALKKLKTLYQDFQDGKKPTPANVAARAATAAMPSGGVQRASTIQPLNGVTFAAVIGLLTQAIPYVVSILGSFTATVVNNSITNKYQQNAYNVQRLNNMNVNELNLQIQNLDRDIAATNRFNFIQLMALSQFRIVYQQRFDRISGYGLLSNLPGWVLPAALGLGAYLLLRRK |
| Ga0209296_100420920 | F008615 | N/A | MNTPNTFGAKMFNRFMRKGWHISFTDSYQDRVCVIPPERLDAKHLFGIYIPVMRHTWQPDLKREWWAALQDKNTMHGPTFEASAHPDDIERFAAFAAWIGDLLRNPEKFT |
| Ga0209296_10042096 | F002259 | N/A | MGMSAQDKMLNVASRLGLTTLKDMQGTTRMVYDSNTTAALTHTFFKGAAQRAFPVTNVGANGNQFQVNEALLVEKIGFFIPSDATGVGYAGLAGTSVKFDLVIGNKTVIKDASCEFGGEQSFYNDGTIGSSVIDLEGVGILIPPQVEYYVVAKTFATGARTASTVRLGCYLFGTGALLNFNTTI |
| Ga0209296_10042097 | F006697 | N/A | MANQVQKLSYVDNKLGVSLPGQQTTRVIYDSINATAGQQSFQFFTNFAGKTEFQTNLTTNKLDSAESMVIKSVQIIMNSATINLNDHLNLNITVGNQVVLKDFDPSFNSSNRGLAFDRLHSGFNDNQNLEFRLLTEIVIPPQVNFKAELVLGNALIALNDDITIVFKGYGRIFSAGNSF |
| Ga0209296_10042098 | F000710 | N/A | MASNMNISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGILLSSTTSAAPATLVNATQLRVTLTINNDVVIDDVIAHDLGASVNGGVTTGFPAFVPFPRALTGQDTILLRVTNSSGASQLLNATVYYKNEI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |