NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1000840

Scaffold Ga0209296_1000840


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1000840 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25522
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (41.03%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054636Metagenome / Metatranscriptome139Y
F059435Metagenome / Metatranscriptome134Y
F073464Metagenome / Metatranscriptome120N
F084145Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_100084010F073464AGGAGMATKRWFMTLVVEIDEESNPRKFVPDAINECLDSAKGEDIIDYKFVCPD
Ga0209296_100084017F084145N/AMFLSCPVSLDLIDAQWYDDIDEAKEDALDWSVELSGEKVIVYRAVESNGGDYEFNKLYAICA
Ga0209296_100084032F054636N/AMKFEFDDYEKDVLLETIRHRLDTDKVLIINDSLRKDVEDLFQKIEEDEYL
Ga0209296_100084033F059435AGAAGMNTYNISVRGVNVIEQISQEDLQESLKLIRGLVWTSGGGNEDITVVLNSNEVPCNE
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