| Basic Information | |
|---|---|
| Taxon OID | 3300027759 Open in IMG/M |
| Scaffold ID | Ga0209296_1000741 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 27721 |
| Total Scaffold Genes | 31 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (16.13%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F021536 | Metagenome / Metatranscriptome | 218 | Y |
| F032655 | Metagenome / Metatranscriptome | 179 | N |
| F048941 | Metagenome | 147 | Y |
| F082678 | Metagenome / Metatranscriptome | 113 | N |
| F104500 | Metagenome / Metatranscriptome | 100 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209296_100074112 | F021536 | N/A | MIFIEVDEAYAFDYLSILQVKKQKSSSAIETWSRCYLNLQTQFDSEKWFLMINSEEYENMIKANLLTFDAVDKAKNNEVTAQHVDYCNYQRHTAKQNFQKKFFNNNLCELKIGYDKYESSTL |
| Ga0209296_100074120 | F082678 | N/A | MKDFNNNELATLRIALMDKIDKMDEIVKNCEKTNDITSQLYWQEAIVRNNELLNKLYDMQ |
| Ga0209296_100074126 | F032655 | N/A | MENEVTILKTEKILGLFVVTYRLEGENFNRVSNRRTMEEITKAIQELINNKNGIRVVNNIIPSVKYSNSGRYFVNNRGVSVEE |
| Ga0209296_100074127 | F048941 | N/A | MSMRGDVIRSVLDKAVRYYMPPSDIAELINDIFANLEWSEDLDITIQDLIECVKFYATDKHSSCDKDAYNKWLELHDSW |
| Ga0209296_100074130 | F104500 | N/A | MTTKEITVADIIKFFQSVPPETKIRVKEEVQRNWETFTKYTNVVQYGNGEFNIECVDGISYCKEKNIIDFGI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |