NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1000130

Scaffold Ga0209296_1000130


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1000130 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)63809
Total Scaffold Genes93 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)64 (68.82%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010619Metagenome / Metatranscriptome301Y
F019323Metagenome230Y
F022413Metagenome / Metatranscriptome214N
F030988Metagenome183Y
F043225Metagenome / Metatranscriptome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_100013053F010619GGAGMQDPIDFENSHPCMEKIIESDKLLPVTKSVAKMLMRNPYTSLGKFFRKLSDENLQVLSEIIEEGDSEFNDGMEDIVLMTEMLSRAEGVPSQSIEDITENVNYFGACITCVSLARKGFVRVYYDNMSFGTDQGDKVLVEKL
Ga0209296_100013059F043225AGGAMNVDLINAELQTVALTQQQEEIDLTYQDFLDTMNAYHDMMMYESYSYDEDAIFYGVN
Ga0209296_100013064F022413AGGAMLLAKPKLTNTLDAKEFETFAECQEYLEAYTDISMPLVEWIALGKILVAETMTTPEFYPKKVKGQIVMAKFDIEEFA
Ga0209296_100013072F030988GGAGMKHWGELNELETEIIRVSEFKNLFKLLVAGTENYVDIKVLQSAIYTMEGMLDDIDSTLYEKFQTVFDAVRDDETEGGEEEFEFNFSTMNDNNVNAYSTITVPDSEYQGSTVQNNSDFYEDEAFKDLEKAIKNWKPTAP
Ga0209296_10001309F019323AGGAMIVEKIKIAEPVRGFTERDRSSKAILNTDIDSLLKYKIQKRKISDINKSTNEIALIRGEVDNIKSELSEIKHLLLKITKERE
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