| Basic Information | |
|---|---|
| Taxon OID | 3300027757 Open in IMG/M |
| Scaffold ID | Ga0208671_10000458 Open in IMG/M |
| Source Dataset Name | Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.759 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 20650 |
| Total Scaffold Genes | 42 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (19.05%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Columbia River Estuary, USA | |||||||
| Coordinates | Lat. (o) | 46.2 | Long. (o) | -123.94 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011136 | Metagenome / Metatranscriptome | 294 | Y |
| F026004 | Metagenome | 199 | Y |
| F042339 | Metagenome | 158 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208671_1000045836 | F042339 | N/A | MLYWYDTALQIDSLYQMERLKVTYYSKITGIQATSYETLAEIYKNKQSIEKAIAVEKHNEIGELKKKNRRLIITNTALTLGITGLAFSTIYFAIL |
| Ga0208671_1000045837 | F026004 | N/A | MGQKELRRIVLYLSAITIAGVMIIVAFKTCNEPVTNPAIKRLQDVNDSLYQIIETNNAKTDSLFLKIDSLQIKQDTIITKQQITNEIYRNETYNILSGSATDSDIKFRSTLKKSDSLLKQGFYTRTYNLRQAAFQSQFQ |
| Ga0208671_100004585 | F011136 | AGAAGG | LLHEVLARLMDRPRQDIEDIVCKGKVEAYVNRALWLSWHSNRSDYAIKYRKYYELHVEKQVDDSKQDETWIGAFIDGEYLYNAIGRLNEFDAILLRLYSKPDFDYKELSRETGIPYNYLRTSIHRALKRIREYVKLQRSLSHTARETEYLQKM |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |