NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1040302

Scaffold Ga0209596_1040302


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1040302 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2533
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009265Metagenome / Metatranscriptome320Y
F009746Metagenome / Metatranscriptome313N
F029096Metagenome189Y

Sequences

Protein IDFamilyRBSSequence
Ga0209596_10403022F009746AGGAMANLATYRANLAATLAAAGRVVYSWPNENITPPAIVLVPGSPYITVTAIGGARCHVRFDITVIVNAADNQAALANIETLIFSVTDLLSNNISFLGGWSQPTVQQIGNADMLISQLNIEMVTTN
Ga0209596_10403024F009265N/AMDQLPEHNPENRANLMKYNVTTKQGNNYIVSDESAWLWVEIERELGYTVSQAADKMSQGSLDVITCMLFKAAKAAGNTKLPSQQAWVINEFETFEVVEDSPKES
Ga0209596_10403025F029096N/AMDTMAETRTTITVRPDLADYRGLLKVLNLMEKESQVELKDDVYSISSWTATGIQQAGFAHPYYPKQARIVAETVRAARDRVPTVYVGGSKKMPVTRKITQGNPAPSAGQLLFGNEFGGDRNAFGNANAFPNGGFRFPPRTSREGRGNTGYWIFPTLKAMQPEIKRKWFEAVNKVLDNWARTP
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