NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1018095

Scaffold Ga0209596_1018095


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1018095 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4319
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010463Metagenome303N
F014488Metagenome262Y
F024265Metagenome206N
F033350Metagenome177N

Sequences

Protein IDFamilyRBSSequence
Ga0209596_10180951F014488N/AMNHQGQDPADSILASYTPDMAEHIDTLQDRVKERLARMQAMNPSIDLDQLAKLTAEVVEQTIKHEGDSQMLRHRRDDTLDESLLALATNRSPDSLTSIAKRYINPSTGKPYTRAAISARLTELSQRTGLVLRIQRSERVRQIYKERALRVHKKRRQECPK
Ga0209596_101809510F033350AGGAGGMSAVDVEVPQTKWSMLVWKTIKEKPYNDEKVLMDIGGEVVVGRFIDGSFVSRSWGHSENDVRLWASWPKAPKW
Ga0209596_10180953F024265AGTAGMNEPFTSSEAKAKGILSYRYPGKEMAKLYAENRNQATIDMLRDAVFTLITNEIPTCTIAQVLRKTHGAIQYHLRFLEGDGKLKRRNKRCHWREAVEA
Ga0209596_10180957F010463AGGCGGVIAHPQELVLAATIHRVKSCEERIAQFEQMVSTLTAQMAQNRTELASKGLANLVMGTTIPLDIPRELRPTFGKYRARGNRSHNTVQKRWGIWKAQYESGLTVKEIANAWGCHHSSIVNAKSKNFTARKSTGRATK
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