NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1014704

Scaffold Ga0209596_1014704


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1014704 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4946
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (7.69%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020696Metagenome / Metatranscriptome222Y
F042902Metagenome / Metatranscriptome157Y
F087193Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0209596_101470410F042902N/AMTLKDLIDLAGDRELSKSYPKADGVYIWDYKLQYNQDLGLELALIPSDSGKAGFKDKVSVEELINYVLDEHDPEVPADQILAELQIVDVEGITVAKV
Ga0209596_10147044F020696N/AMKKLETCHHCGEQKEDCYHGYIAMTLPIPEAEALIEKWGRKDWFKNLERTDLTEEEMKELDGLCTYDQLLSTVGRGVQCEDCGKKEAELYDKYYPRVVS
Ga0209596_10147049F087193N/ALKTKEKYNMEVKKATEFETLRVLHTLWKSRSLETAVVKRLLKEEFDLDLTVLANGEISAQSPDGKNKYSIK
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