NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1007090

Scaffold Ga0209596_1007090


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1007090 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7969
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (18.75%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023790Metagenome208N
F056374Metagenome / Metatranscriptome137N
F059905Metagenome133N

Sequences

Protein IDFamilyRBSSequence
Ga0209596_100709011F023790N/AMISQTRRFEVQSTFEDNKTLYVVTTRGELFPDNTQSKAITFDFQRLDKKKLTKKEEKFSDDVFNSIIKDKR
Ga0209596_10070903F056374N/AMKARKTIEIEVIKERVNRFLANSRNEDSQIRKGHHGLATMLLMDAGAYKGFNYLRKEDVAPGQTFGVDWSSGQPVFHDETRTYFH
Ga0209596_10070908F059905N/AMKNDCKNAIRYLVSKTYEVYAKYKNSISVLSLPGESWEFENHILNHQDYRNCIQQIPMDLQLLCFEKSFRTYSVSNLLDKNKDNNTQYINDKVTLDHLKLLKNKNKFLWFDFCGNPSVESLQFLNSCFVQGEKICAIFTFTLLWRRRDNLPLEIDNLSQSNTNEEAIQIYFKQALKDLNANIEGYSNKITLLWKYTYISSRAPMICLCVTNDSTLKCEPALKGQGELLKPDQEITPAAETKGDLDLGEELVCKMKTSKRSLAAHKAWVTIRANKAKATLVPAQ
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Institute for Fundamental Biomedical Research
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