NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1005319

Scaffold Ga0209596_1005319


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1005319 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9543
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (77.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002489Metagenome / Metatranscriptome554Y
F051930Metagenome / Metatranscriptome143Y
F063685Metagenome / Metatranscriptome129Y
F085710Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0209596_100531916F085710AGGTGGMDYNDYYDDIYLDIYLEFGADSVSNPAYAEQLAKDKGVR
Ga0209596_100531918F063685GGAMTIELDTYGFMFDTEWAYIALSWQLLITTALVAVAYKAYKKWGNRK
Ga0209596_10053192F051930AGGAGMRIQYVSTYISMSEEGLVEKLLCPVDQSILFSNQNLLDEVYLYCLECDYKKALGTASYQKIVDEVNKHKNV
Ga0209596_10053194F002489GAGGMQEDQKDNNTSSSDLEDNLPMVTYIMLHRIYDVLTLLANKVVGGEDTQKMIDYHNEGYLLGPAPSFKPNEE
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