NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1003773

Scaffold Ga0209596_1003773


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1003773 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11759
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007467Metagenome / Metatranscriptome350Y
F025460Metagenome201N
F030376Metagenome / Metatranscriptome185N

Sequences

Protein IDFamilyRBSSequence
Ga0209596_100377311F030376GAGMKAITTITLMAMLMASGMAEDDDGDAADFVGAVLKRNGFSCGRGCVISENGGMAYSSSSGRSIISTEGFYYKSGSSVVGKDATFISKSRNFFYGTSATIKAGSAYMNGDAVWVGSQEEDN
Ga0209596_100377313F007467N/AMKDKEAWDQFEDGLQDAQSYDEAVAWIKANQEIVEKLTIRAMINKFNRDISHANKTWRN
Ga0209596_10037738F025460AGGAGMAVIDVPELFNMFRQGDLDKQAAAEAQRKREIEDREMALKERPDVDFTFEKGGLKVKGKLKDLPALSQDPAFAPYLAGIGSTITNEQSLENEDINAQREAINTRLTKLSQEKLKQELEIAKGDTRTGAMELGLGLVGLKKRSDVMKEVEAERGVLQGKMAELGFNRQAGQMETNVPDYQSPTMPLQAPAQVAPETPVQAPAQAPAQPEAPKNFNSLQEAKAAGVKPGQLIYINGKPGRLQARQ
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