NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1000420

Scaffold Ga0209596_1000420


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1000420 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39434
Total Scaffold Genes72 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)66 (91.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001094Metagenome / Metatranscriptome780Y
F005558Metagenome396Y
F014590Metagenome261Y
F027417Metagenome194Y

Sequences

Protein IDFamilyRBSSequence
Ga0209596_100042011F027417AGGAGGMEYDYRVTFITDYLTITTNVSLNLDDTIGNCSDEANEQARINGLNNIVDELGRFDETLINDITVTLLLKDEEIEL
Ga0209596_10004205F014590AGGAGVRTRHLSLVTHEHLDTVNKSEPVLSPYGPVRAGLTTSQTTQSQELSELLNSLESAVENLNYKSFTVYDTLTIAIEAVRVALSATQTDEAGTDV
Ga0209596_100042055F001094GGAGMDTKKLKAIALTYVRAGIAATLALYLAGETDAKKLLLAAVAAVAGPVLKALDPNSPEFGRGSK
Ga0209596_10004208F005558GAGGMDKVMYWSELAELTHATQVERFNWCICEDNDGLENPYSDCPKEGE
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